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Neutron crystal structure for copper nitrite reductase from Achromobacter Cycloclastes at 1.8 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BW4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 297 1.2M Ammonium sulphate, Citrate buffer pH 5 all deuterium based
Crystal Properties Matthews coefficient Solvent content 2 35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.98 α = 90 b = 97.98 β = 90 c = 97.98 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 neutron 293 DIFFRACTOMETER LADI III 2015-07-24 L LAUE
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 NUCLEAR REACTOR ILL BEAMLINE LADI III 3.05 - 4.00 ILL LADI III
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 40 85.5 0.063 7.9 6.5 24728
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 69.8 0.13 3.7 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B NEUTRON DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2BW4 1.801 32.66 1.56 23020 1145 78.56 0.2339 0.2317 0.2764
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.798 f_angle_d 0.884 f_chiral_restr 0.063 f_plane_restr 0.005 f_bond_d 0.004
Software Software Software Name Purpose PHENIX refinement LaueView data reduction SCALA data scaling PHENIX phasing