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Solution structure of lipase binding domain LID1 of foldase from Pseudomonas aeruginosa
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 530 uM [U-13C; U-15N] Lipase-interaction domain 1 90% H2O/10% D2O 20 mM 7.4 1 atm 303 Bruker AVANCE III 600 2 2D 1H-13C HSQC 530 uM [U-13C; U-15N] Lipase-interaction domain 1 90% H2O/10% D2O 20 mM 7.4 1 atm 303 Bruker AVANCE III 600 3 3D HN(CA)CO 530 uM [U-13C; U-15N] Lipase-interaction domain 1 90% H2O/10% D2O 20 mM 7.4 1 atm 303 Bruker AVANCE III 600 4 3D HNCACB 530 uM [U-13C; U-15N] Lipase-interaction domain 1 90% H2O/10% D2O 20 mM 7.4 1 atm 303 Bruker AVANCE III 600 5 3D HCCH-TOCSY 530 uM [U-13C; U-15N] Lipase-interaction domain 1 90% H2O/10% D2O 20 mM 7.4 1 atm 303 Bruker AVANCE III 600 6 3D 1H-15N NOESY 530 uM [U-13C; U-15N] Lipase-interaction domain 1 90% H2O/10% D2O 20 mM 7.4 1 atm 303 Bruker AVANCE III 600 7 3D 1H-13C NOESY 530 uM [U-13C; U-15N] Lipase-interaction domain 1 90% H2O/10% D2O 20 mM 7.4 1 atm 303 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600
NMR Refinement Method Details Software molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 20 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing TopSpin Bruker Biospin 3 chemical shift assignment CARA Keller and Wuthrich 4 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 5 geometry optimization Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 6 data analysis TopSpin Bruker Biospin 7 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 8 peak picking CARA Keller and Wuthrich