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Crystal structure of miniSOG at 1.17A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4EEP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 100 mM Tris-Hcl pH 8.0, 20 mM MgCl2, 28% PEG 4000, 0 or 15 mM CoCl2
Crystal Properties Matthews coefficient Solvent content 2.02 39.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.02 α = 90 b = 40.02 β = 90 c = 134.29 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9763 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.17 80 99.8 0.062 1 22.1 8.2 37913 16.235
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.17 1.2 99.9 1.205 0.704 2 8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4eep 1.17 38.35 36063 1850 99.8 0.13414 0.13265 0.1327 0.164 0.1634 RANDOM 15.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.02 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.962 r_sphericity_free 23.7 r_dihedral_angle_4_deg 20.15 r_dihedral_angle_3_deg 13.176 r_sphericity_bonded 8.426 r_dihedral_angle_1_deg 6.195 r_long_range_B_refined 3.792 r_long_range_B_other 3.791 r_scangle_other 2.34 r_scbond_other 1.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.962 r_sphericity_free 23.7 r_dihedral_angle_4_deg 20.15 r_dihedral_angle_3_deg 13.176 r_sphericity_bonded 8.426 r_dihedral_angle_1_deg 6.195 r_long_range_B_refined 3.792 r_long_range_B_other 3.791 r_scangle_other 2.34 r_scbond_other 1.89 r_scbond_it 1.887 r_mcangle_other 1.882 r_mcangle_it 1.88 r_rigid_bond_restr 1.797 r_angle_refined_deg 1.7 r_mcbond_it 1.45 r_mcbond_other 1.411 r_angle_other_deg 0.834 r_chiral_restr 0.108 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 932 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 42
Software Software Software Name Purpose XDS data reduction PHASER phasing REFMAC refinement Coot model building