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KRAS full length G12V GPPNHP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DST
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 0.1 M TrisCl, 0.2 M NaOAc and 30-35 % PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.55 51.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.88 α = 90 b = 79.88 β = 90 c = 78.79 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2015-09-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.928 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 39.94 99.7 0.088 0.098 0.043 0.996 9.4 5.1 24651
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.64 99.8 1.07 0.526 0.528 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4DST 1.6 39.94 23463 1188 99.7 0.18373 0.18186 0.1911 0.22007 0.2311 RANDOM 30.468
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.08 -0.15 0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.787 r_dihedral_angle_4_deg 20.318 r_dihedral_angle_3_deg 15.96 r_long_range_B_refined 7.473 r_long_range_B_other 7.436 r_scangle_other 6.07 r_dihedral_angle_1_deg 5.789 r_mcangle_it 4.221 r_mcangle_other 4.219 r_scbond_other 4.099
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.787 r_dihedral_angle_4_deg 20.318 r_dihedral_angle_3_deg 15.96 r_long_range_B_refined 7.473 r_long_range_B_other 7.436 r_scangle_other 6.07 r_dihedral_angle_1_deg 5.789 r_mcangle_it 4.221 r_mcangle_other 4.219 r_scbond_other 4.099 r_scbond_it 4.092 r_mcbond_other 3.042 r_mcbond_it 3.041 r_angle_refined_deg 2.071 r_angle_other_deg 1.116 r_chiral_restr 0.135 r_bond_refined_d 0.022 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1328 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing