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Holliday Junctions formed from Telomeric DNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HS1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 285 25 mM Potassium Chloride, 10 mM Potassium Cacodylate, 50mM Magnesium Chloride, 20mM Calcium Chloride, 35% v/v (+/-)-2-Methyl-2,4-Pentanediol.
Crystal Properties Matthews coefficient Solvent content 2.42 49.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 23.334 α = 99.27 b = 33.183 β = 90 c = 41.303 γ = 110.59
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2015-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.92016 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 15.74 92.9 0.114 0.161 0.114 0.947 5.6 1.8 2615
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 96.5 0.336 0.475 0.336 0.952 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3HS1 2.95 15.74 2083 125 92.08 0.2441 0.2421 0.2344 0.2863 0.2784 RANDOM 72.563
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.88 -3.54 0.22 -8.13 3 9.19
RMS Deviations Key Refinement Restraint Deviation r_angle_other_deg 2.217 r_angle_refined_deg 1.457 r_chiral_restr 0.095 r_gen_planes_refined 0.015 r_bond_other_d 0.014 r_bond_refined_d 0.01 r_gen_planes_other 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 808 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose CrysalisPro data reduction Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction