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DIHYDROOROTASE FROM AQUIFEX AEOLICUS UNDER 600 BAR OF HYDROSTATIC PRESSURE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XRF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 ETHANOL (12%), PEG 400 (4%), ACETATE, PH 4.6 (0.1 M)
Crystal Properties Matthews coefficient Solvent content 3.28 62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.84 α = 90 b = 176.488 β = 90 c = 65.518 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD MARRESEARCH 2015-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID27 0.3738 ESRF ID27
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 45.42 76.8 0.135 8.3 4.7 14277 46.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 78.3 0.833 1.7 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1XRF 2.5 45.42 13031 69.8 0.168 0.168 0.1707 45.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.07 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.641 r_dihedral_angle_3_deg 21.987 r_dihedral_angle_4_deg 21.746 r_long_range_B_refined 11.357 r_dihedral_angle_1_deg 9.062 r_mcangle_it 7.346 r_scbond_it 6.199 r_mcbond_it 5.038 r_angle_refined_deg 1.338 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.641 r_dihedral_angle_3_deg 21.987 r_dihedral_angle_4_deg 21.746 r_long_range_B_refined 11.357 r_dihedral_angle_1_deg 9.062 r_mcangle_it 7.346 r_scbond_it 6.199 r_mcbond_it 5.038 r_angle_refined_deg 1.338 r_chiral_restr 0.09 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2847 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling BUCCANEER phasing