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Flavonoid-responsive Regulator FrrA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 6mg/ml FrrA in 20 mM Na2HPO4, 100 mM imidazole, pH 7.5, 50 mM NaCl. Precipitant 20 % PEG 8000; 0.1 M CHES, pH 9.5.
Crystal Properties Matthews coefficient Solvent content 3.2 61.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.592 α = 90 b = 119.592 β = 90 c = 78.476 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-09-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.979031 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.919 47.57 99.6 0.101 0.999 15.17 7.02 47028 70.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.919 3.1 99 0.931 1.96 7.17
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.92 47.56 23109 1080 99.72 0.18383 0.18252 0.1884 0.21112 0.2205 RANDOM 78.384
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.71 -0.71 1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.648 r_dihedral_angle_3_deg 17.013 r_dihedral_angle_4_deg 15.496 r_long_range_B_refined 8.877 r_long_range_B_other 8.877 r_scangle_other 6.937 r_dihedral_angle_1_deg 5.56 r_mcangle_it 5.29 r_mcangle_other 5.289 r_scbond_it 4.367
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.648 r_dihedral_angle_3_deg 17.013 r_dihedral_angle_4_deg 15.496 r_long_range_B_refined 8.877 r_long_range_B_other 8.877 r_scangle_other 6.937 r_dihedral_angle_1_deg 5.56 r_mcangle_it 5.29 r_mcangle_other 5.289 r_scbond_it 4.367 r_scbond_other 4.366 r_mcbond_it 3.444 r_mcbond_other 3.444 r_angle_refined_deg 1.552 r_angle_other_deg 1.358 r_chiral_restr 0.076 r_bond_refined_d 0.012 r_bond_other_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6116 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling Auto-Rickshaw phasing