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MHC A02 Allele presenting MTSAIGILPV
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5EU5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291
Crystal Properties Matthews coefficient Solvent content 2.9 57.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.98 α = 90 b = 171.09 β = 90 c = 50.58 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-01-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.96895 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.66 50.58 89.5 0.17 0.185 0.993 7.5 6.1 27470
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.66 2.73 82.1 1.307 1.422 0.558 1.3 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5EU5 2.9 50.58 20791 1074 91.39 0.23816 0.23554 0.2386 0.28709 0.2886 RANDOM 71.596
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.79 3.9 1.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.292 r_dihedral_angle_3_deg 21.13 r_dihedral_angle_4_deg 16.337 r_dihedral_angle_1_deg 8.36 r_long_range_B_refined 4.858 r_long_range_B_other 4.858 r_scangle_other 2.914 r_mcangle_other 2.802 r_mcangle_it 2.8 r_angle_refined_deg 1.939
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.292 r_dihedral_angle_3_deg 21.13 r_dihedral_angle_4_deg 16.337 r_dihedral_angle_1_deg 8.36 r_long_range_B_refined 4.858 r_long_range_B_other 4.858 r_scangle_other 2.914 r_mcangle_other 2.802 r_mcangle_it 2.8 r_angle_refined_deg 1.939 r_scbond_it 1.729 r_scbond_other 1.726 r_mcbond_it 1.659 r_mcbond_other 1.651 r_angle_other_deg 1.132 r_chiral_restr 0.112 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6316 Nucleic Acid Atoms Solvent Atoms 33 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction XDS data reduction Aimless data scaling PHASER phasing