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MHC A02 Allele presenting MTSAIGILVP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5EU5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291
Crystal Properties Matthews coefficient Solvent content 2.85 56.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 202.94 α = 90 b = 50.28 β = 122.86 c = 119.07 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2018-01-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.96859 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 41.05 98.7 0.104 0.123 0.993 9.1 3.5 37034 61.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.51 97.5 1.155 1.354 0.594 1 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5EU5 2.45 41.05 35216 1818 98.27 0.22569 0.22328 0.2273 0.27021 0.2678 RANDOM 84.848
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.26 2.04 -1 -2.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.284 r_dihedral_angle_4_deg 22.432 r_dihedral_angle_3_deg 19.454 r_long_range_B_refined 7.723 r_long_range_B_other 7.723 r_dihedral_angle_1_deg 7.674 r_scangle_other 5.544 r_mcangle_other 4.827 r_mcangle_it 4.826 r_scbond_it 3.594
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.284 r_dihedral_angle_4_deg 22.432 r_dihedral_angle_3_deg 19.454 r_long_range_B_refined 7.723 r_long_range_B_other 7.723 r_dihedral_angle_1_deg 7.674 r_scangle_other 5.544 r_mcangle_other 4.827 r_mcangle_it 4.826 r_scbond_it 3.594 r_scbond_other 3.592 r_mcbond_it 3.133 r_mcbond_other 3.128 r_angle_refined_deg 1.9 r_angle_other_deg 1.111 r_chiral_restr 0.112 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6320 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction XDS data reduction Aimless data scaling PHASER phasing