☰ Navigation Tabs
Crystal structure of haspin in complex with 5-bromotubercidin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4OUC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 51-63% MPD and 0.1M SPG buffer, pH 6.0-6.5
Crystal Properties Matthews coefficient Solvent content 3 59.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.301 α = 90 b = 78.76 β = 90 c = 79.3 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 23.87 99.8 0.073 0.996 10.8 5.2 71557
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.63 99.8 0.643 0.758 2.3 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4OUC 1.55 23.87 67910 3573 99.61 0.16128 0.1602 0.1723 0.18269 0.1918 RANDOM 28.455
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.23 0.46 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.336 r_sphericity_bonded 25.5 r_dihedral_angle_4_deg 13.766 r_dihedral_angle_3_deg 12.414 r_long_range_B_refined 7.082 r_long_range_B_other 7.081 r_dihedral_angle_1_deg 6.542 r_scangle_other 2.357 r_scbond_it 1.622 r_scbond_other 1.622
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.336 r_sphericity_bonded 25.5 r_dihedral_angle_4_deg 13.766 r_dihedral_angle_3_deg 12.414 r_long_range_B_refined 7.082 r_long_range_B_other 7.081 r_dihedral_angle_1_deg 6.542 r_scangle_other 2.357 r_scbond_it 1.622 r_scbond_other 1.622 r_angle_refined_deg 1.615 r_mcangle_it 1.301 r_mcangle_other 1.3 r_angle_other_deg 0.934 r_mcbond_it 0.812 r_mcbond_other 0.811 r_chiral_restr 0.106 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2699 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing