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Crystal structure of the BRI1 Gly644-Asp (bri1-6) mutant from Arabidopsis thaliana.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3RIZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 298 18% [w/v] PEG 4,000, 0.2 M (NH4)2SO4, 0.1 M citric acid pH 4.0
Crystal Properties Matthews coefficient Solvent content 3.32 62.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.684 α = 90 b = 67.569 β = 100.65 c = 151.85 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97963 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.54 19.89 98.5 0.064 0.071 0.99 13.9 5.2 39088 -3 65.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.54 2.69 95 1.12 1.25 0.78 1 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3RIZ 2.54 19.89 37172 1898 98.67 0.2071 0.20477 0.2084 0.25447 0.2521 RANDOM 87.966
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.21 1.17 -0.77 -4.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.112 r_dihedral_angle_4_deg 20.893 r_dihedral_angle_3_deg 13.083 r_long_range_B_refined 11.115 r_long_range_B_other 11.115 r_scangle_other 7.479 r_dihedral_angle_1_deg 6.346 r_mcangle_it 4.906 r_mcangle_other 4.906 r_scbond_it 4.691
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.112 r_dihedral_angle_4_deg 20.893 r_dihedral_angle_3_deg 13.083 r_long_range_B_refined 11.115 r_long_range_B_other 11.115 r_scangle_other 7.479 r_dihedral_angle_1_deg 6.346 r_mcangle_it 4.906 r_mcangle_other 4.906 r_scbond_it 4.691 r_scbond_other 4.689 r_mcbond_it 3.136 r_mcbond_other 3.133 r_angle_refined_deg 1.928 r_angle_other_deg 1.089 r_chiral_restr 0.107 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5572 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms 193
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing