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Crystal structure of BAZ2A PHD zinc finger in complex with Fr 19
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4QF2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 2.2-2.4 M sodium/potassium phosphate
Crystal Properties Matthews coefficient Solvent content 2.44 49.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.095 α = 90 b = 72.095 β = 90 c = 99.198 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2016-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9686 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 45.34 99.3 0.045 14.3 3.8 21069
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4QF2 1.9 45.34 19952 1084 98.91 0.1916 0.18952 0.1964 0.23101 0.2361 RANDOM 37.775
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 0.82 -1.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.914 r_dihedral_angle_4_deg 16.328 r_dihedral_angle_3_deg 14.74 r_long_range_B_other 6.238 r_long_range_B_refined 6.237 r_dihedral_angle_1_deg 6.165 r_scangle_other 3.38 r_scbond_it 2.248 r_scbond_other 2.248 r_mcangle_it 2.229
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.914 r_dihedral_angle_4_deg 16.328 r_dihedral_angle_3_deg 14.74 r_long_range_B_other 6.238 r_long_range_B_refined 6.237 r_dihedral_angle_1_deg 6.165 r_scangle_other 3.38 r_scbond_it 2.248 r_scbond_other 2.248 r_mcangle_it 2.229 r_mcangle_other 2.228 r_angle_refined_deg 1.898 r_mcbond_it 1.402 r_mcbond_other 1.402 r_angle_other_deg 1.314 r_chiral_restr 0.109 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1615 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing