6F6Q

Carboxypeptidase T mutant L254N with Sulphamoil Arginine


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1LIQUID DIFFUSION296SA 1.4%

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 157.81α = 90
b = 157.81β = 90
c = 103.94γ = 120
Symmetry
Space GroupP 63 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2016-12-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL41XU0.85SPring-8BL41XU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7929.8299.650.114.590230.6371613
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.791.8997.860.312.49.44

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.7928.7767962362699.60.116080.115270.13127RANDOM17.32
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.11
r_sphericity_free21.551
r_dihedral_angle_4_deg16.575
r_dihedral_angle_3_deg11.609
r_dihedral_angle_1_deg6.533
r_sphericity_bonded6.136
r_long_range_B_refined2.387
r_rigid_bond_restr2.14
r_long_range_B_other2.106
r_scangle_other1.767
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.11
r_sphericity_free21.551
r_dihedral_angle_4_deg16.575
r_dihedral_angle_3_deg11.609
r_dihedral_angle_1_deg6.533
r_sphericity_bonded6.136
r_long_range_B_refined2.387
r_rigid_bond_restr2.14
r_long_range_B_other2.106
r_scangle_other1.767
r_scbond_it1.6
r_scbond_other1.587
r_angle_refined_deg1.338
r_mcangle_it1.303
r_mcangle_other1.303
r_mcbond_it1.024
r_mcbond_other1.015
r_angle_other_deg0.998
r_chiral_restr0.086
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2581
Nucleic Acid Atoms
Solvent Atoms338
Heterogen Atoms37

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing