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The cytotoxic [Pt(H2bapbpy)] platinum complex interacting with the CGTACG hexamer
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3NP6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 296 Strontium chloride, Magnesium chloride, Sodium Cacodylate, MPD, spermine chloride
Crystal Properties Matthews coefficient Solvent content 1.95 57.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.09 α = 90 b = 30.09 β = 90 c = 116.99 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.97264 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.29 39 99.6 0.164 0.17 0.993 10.35 16.101 3083 67.61
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.29 2.43 98.5 1.527 1.579 0.326 1.09 14.985
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3NP6 2.3 39 2732 347 99.58 0.261 0.2573 0.2728 0.2923 0.2846 RANDOM 58.268
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.56 -4.56 9.11
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 1.781 r_chiral_restr 0.1 r_bond_refined_d 0.02 r_gen_planes_refined 0.017
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 442 Solvent Atoms 9 Heterogen Atoms 55
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction MOLREP phasing