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Torpedo californica AChE in complex with indolic multi-target directed ligand
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EA5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 36% PEG 200
150mM MES pH 5.6
Crystal Properties Matthews coefficient Solvent content 3.03 59.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.44 α = 90 b = 106.74 β = 90 c = 150.75 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2013-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.939 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 46.09 99.72 8.43 4.49 45936
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.67
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1ea5 2.6 46.09 44557 1379 99.7 0.22342 0.22192 0.2239 0.27315 0.2721 RANDOM 13.113
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.61 5.28 -3.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.942 r_dihedral_angle_4_deg 17.366 r_dihedral_angle_3_deg 16.545 r_dihedral_angle_1_deg 6.204 r_long_range_B_refined 6.03 r_long_range_B_other 5.923 r_scangle_other 5.843 r_scbond_it 4.779 r_scbond_other 4.754 r_mcangle_other 4.165
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.942 r_dihedral_angle_4_deg 17.366 r_dihedral_angle_3_deg 16.545 r_dihedral_angle_1_deg 6.204 r_long_range_B_refined 6.03 r_long_range_B_other 5.923 r_scangle_other 5.843 r_scbond_it 4.779 r_scbond_other 4.754 r_mcangle_other 4.165 r_mcangle_it 4.162 r_angle_other_deg 3.976 r_mcbond_it 3.126 r_mcbond_other 3.119 r_angle_refined_deg 1.271 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_other 0.008 r_gen_planes_refined 0.007 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8488 Nucleic Acid Atoms Solvent Atoms 570 Heterogen Atoms 114
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing