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CHEMOTAXIS PROTEIN CHEY FROM Pyrococcus horikoshiI
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U0S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 295 0.1 M Tris-HCl, 1.2 M sodium malonate
Crystal Properties Matthews coefficient Solvent content 2.92 57.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.14 α = 90 b = 124.37 β = 111.75 c = 73.42 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-08-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.9334 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.16 68.19 98.2 0.05 0.062 0.023 1 22.8 7.4 47836 40.95
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.16 2.2 82 1.5 1.6 0.6 0.56 1.2 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1u0s 2.16 68.193 47835 2338 98.19 0.244 0.242 0.2458 0.2751 0.2769 54.307
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.263 1.163 -0.561 -0.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.784 r_dihedral_angle_3_deg 15.545 r_dihedral_angle_4_deg 11.676 r_lrange_it 10.73 r_lrange_other 10.729 r_scangle_it 9.004 r_scangle_other 9.003 r_mcangle_it 6.371 r_mcangle_other 6.37 r_dihedral_angle_1_deg 6.081
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.784 r_dihedral_angle_3_deg 15.545 r_dihedral_angle_4_deg 11.676 r_lrange_it 10.73 r_lrange_other 10.729 r_scangle_it 9.004 r_scangle_other 9.003 r_mcangle_it 6.371 r_mcangle_other 6.37 r_dihedral_angle_1_deg 6.081 r_scbond_it 6.067 r_scbond_other 6.066 r_mcbond_it 4.824 r_mcbond_other 4.821 r_angle_refined_deg 1.792 r_angle_other_deg 1.01 r_nbd_refined 0.225 r_nbd_other 0.196 r_nbtor_refined 0.165 r_xyhbond_nbd_refined 0.158 r_symmetry_nbd_other 0.154 r_symmetry_nbd_refined 0.124 r_ncsr_local_group_8 0.115 r_ncsr_local_group_6 0.114 r_ncsr_local_group_13 0.11 r_ncsr_local_group_4 0.108 r_ncsr_local_group_15 0.107 r_ncsr_local_group_10 0.104 r_ncsr_local_group_7 0.103 r_ncsr_local_group_9 0.103 r_ncsr_local_group_1 0.102 r_chiral_restr 0.099 r_ncsr_local_group_14 0.097 r_ncsr_local_group_12 0.094 r_ncsr_local_group_11 0.093 r_ncsr_local_group_2 0.092 r_ncsr_local_group_3 0.088 r_symmetry_nbtor_other 0.077 r_ncsr_local_group_5 0.066 r_symmetry_xyhbond_nbd_refined 0.062 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5344 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing