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Structure of E282Q A. niger Fdc1 with prFMN in the iminium form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ZA4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.2 M potassium thiocyanate, Bis-Tris propane pH 6.5, 20% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.38 48.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.99 α = 90 b = 63.92 β = 90 c = 87.46 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2014-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 1 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.13 47.99 100 13.99 7 200417
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.13 1.17 0.6468 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4ZA4 1.13 47.99 190315 10102 99.77 0.1437 0.14299 0.1518 0.15715 0.1674 RANDOM 12.371
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 0.61 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.372 r_dihedral_angle_4_deg 21.439 r_dihedral_angle_3_deg 11.927 r_dihedral_angle_1_deg 6.748 r_long_range_B_refined 6.252 r_long_range_B_other 5.304 r_scangle_other 2.993 r_angle_refined_deg 2.679 r_scbond_it 2.174 r_scbond_other 2.173
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.372 r_dihedral_angle_4_deg 21.439 r_dihedral_angle_3_deg 11.927 r_dihedral_angle_1_deg 6.748 r_long_range_B_refined 6.252 r_long_range_B_other 5.304 r_scangle_other 2.993 r_angle_refined_deg 2.679 r_scbond_it 2.174 r_scbond_other 2.173 r_mcangle_it 1.609 r_mcangle_other 1.609 r_angle_other_deg 1.276 r_mcbond_it 1.152 r_mcbond_other 1.145 r_chiral_restr 0.185 r_bond_refined_d 0.031 r_gen_planes_refined 0.018 r_gen_planes_other 0.008 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3811 Nucleic Acid Atoms Solvent Atoms 697 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling REFMAC phasing