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Proteome-wide analysis of phospho-regulated PDZ domain interactions
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 100 % [U-100% 13C] Scribble PDZ1 90% H2O/10% D2O na 6.5 1 Pa 298 Bruker AVANCE 600 2 2D 1H-15N HSQC 100 % [U-100% 13C] Scribble PDZ1 90% H2O/10% D2O na 6.5 1 Pa 298 Bruker AVANCE 900 3 3D 1H-1H TOCSY 100 % [U-100% 13C] Scribble PDZ1 90% H2O/10% D2O na 6.5 1 Pa 298 Bruker AVANCE 900 4 3D HNCACB 100 % [U-100% 13C] Scribble PDZ1 90% H2O/10% D2O na 6.5 1 Pa 298 Bruker AVANCE 600 5 3D 1H-1H NOESY 100 % [U-100% 13C] Scribble PDZ1 90% H2O/10% D2O na 6.5 1 Pa 298 Bruker AVANCE 600 6 3J HNHA 100 % [U-100% 13C] Scribble PDZ1 90% H2O/10% D2O na 6.5 1 Pa 298 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 900
NMR Refinement Method Details Software simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria all calculated structures submitted Conformers Calculated Total Number 20 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CYANA Guntert, Mumenthaler and Wuthrich 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment CcpNmr Analysis CCPN 4 peak picking NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax