6ENS

Structure of mouse wild-type RKIP


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2IQY 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.6293.15PEG 6000, sodium acetate pH 4.6
Crystal Properties
Matthews coefficientSolvent content
1.9938.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 32.58α = 90
b = 54.09β = 90
c = 97.95γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-2252011-05-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.91841BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.323.0698.50.0828.6442630
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.3797.30.64424

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2IQY1.32040315214898.130.126950.124780.16809RANDOM16.613
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.23-0.550.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.817
r_sphericity_free19.11
r_dihedral_angle_4_deg14.771
r_dihedral_angle_3_deg11.205
r_sphericity_bonded10.304
r_dihedral_angle_1_deg6.082
r_long_range_B_refined3.142
r_long_range_B_other3.142
r_scangle_other1.907
r_rigid_bond_restr1.77
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.817
r_sphericity_free19.11
r_dihedral_angle_4_deg14.771
r_dihedral_angle_3_deg11.205
r_sphericity_bonded10.304
r_dihedral_angle_1_deg6.082
r_long_range_B_refined3.142
r_long_range_B_other3.142
r_scangle_other1.907
r_rigid_bond_restr1.77
r_scbond_it1.574
r_scbond_other1.573
r_angle_refined_deg1.559
r_mcangle_other1.4
r_mcangle_it1.399
r_mcbond_other1.093
r_mcbond_it1.07
r_angle_other_deg0.995
r_chiral_restr0.106
r_bond_refined_d0.011
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1451
Nucleic Acid Atoms
Solvent Atoms250
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing