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Structure of the Tn1549 transposon Integrase (aa 82-397, Y379F) in complex with transposon right end DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 13% (v/v) PEG 3350, 0.25 M NaCl 2 VAPOR DIFFUSION 293 13% (v/v) PEG 3350, 0.25 M NaCl
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.23 α = 90 b = 121.681 β = 118.12 c = 77.234 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2013-09-28 M SINGLE WAVELENGTH 2 2 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2013-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.977315 PETRA III, EMBL c/o DESY P13 (MX1) 2 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.977315 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 45.38 96.5 0.065 0.039 0.999 11.7 3.8 41916 57.351
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 98 0.835 0.493 0.659 1.6 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.5 38.597 1.27 41894 4185 93.03 0.1625 0.1605 0.1574 0.1839 0.177
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 21.746 f_angle_d 0.767 f_chiral_restr 0.033 f_bond_d 0.005 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5038 Nucleic Acid Atoms 1791 Solvent Atoms 234 Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement XDS data reduction XSCALE data scaling Coot model building AutoSol phasing