☰ Navigation Tabs
Structure of OrfX2 from Clostridium botulinum A2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.25 293 0.2 M Li2SO4, 0.1 M Phosphate-citrate buffer pH 4.25 and 23% PEG 1000 + 2 mM TCEP
Crystal Properties Matthews coefficient Solvent content 2.46 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.646 α = 90 b = 65.346 β = 94.52 c = 161.455 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.97981 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 41.47 99.4 0.105 0.995 9.8 3.3 48070
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 98.5 0.941 0.693 1.3 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 41.47 45491 2564 99.32 0.21097 0.20825 0.2158 0.25921 0.266 RANDOM 45.673
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.23 1.89 -1.85 -3.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.901 r_dihedral_angle_3_deg 14.036 r_dihedral_angle_4_deg 12.846 r_dihedral_angle_1_deg 6.632 r_long_range_B_refined 6.565 r_long_range_B_other 6.56 r_scangle_other 4.995 r_mcangle_it 3.887 r_mcangle_other 3.886 r_scbond_other 3.198
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.901 r_dihedral_angle_3_deg 14.036 r_dihedral_angle_4_deg 12.846 r_dihedral_angle_1_deg 6.632 r_long_range_B_refined 6.565 r_long_range_B_other 6.56 r_scangle_other 4.995 r_mcangle_it 3.887 r_mcangle_other 3.886 r_scbond_other 3.198 r_scbond_it 3.195 r_mcbond_it 2.522 r_mcbond_other 2.522 r_angle_refined_deg 1.444 r_angle_other_deg 0.888 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5697 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHENIX phasing