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Nuclease NucB from Bacillus licheniformis in P212121 space group
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 2.2 M ammonium sulphate, 0.1 M Tris pH 8.5
Crystal Properties Matthews coefficient Solvent content 1.8 32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.534 α = 90 b = 47.414 β = 90 c = 56.262 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 1.9,0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 47.41 90.1 0.037 0.043 0.022 0.999 29.8 6.7 10804 -3 13
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 77.7 0.116 0.142 0.079 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 36.28 10766 492 89.68 0.1921 0.188 0.2016 0.24 0.1983 RANDOM 17.7017
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 0.78 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.778 r_dihedral_angle_4_deg 17.777 r_dihedral_angle_3_deg 14.653 r_dihedral_angle_1_deg 5.786 r_angle_other_deg 3.782 r_mcangle_it 1.947 r_angle_refined_deg 1.778 r_mcbond_it 1.337 r_mcbond_other 1.304 r_chiral_restr 0.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.778 r_dihedral_angle_4_deg 17.777 r_dihedral_angle_3_deg 14.653 r_dihedral_angle_1_deg 5.786 r_angle_other_deg 3.782 r_mcangle_it 1.947 r_angle_refined_deg 1.778 r_mcbond_it 1.337 r_mcbond_other 1.304 r_chiral_restr 0.108 r_bond_refined_d 0.016 r_gen_planes_other 0.013 r_gen_planes_refined 0.01 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 838 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling SHELXDE phasing XDS data processing BUCCANEER model building