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The crystal structure of the human LAMTOR complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 20% [w/v] PEG 3350, 0.1M Tris/HCl pH8.5, 0.2M MgCl2, 3% 2-Methyl-2-propanol
Crystal Properties Matthews coefficient Solvent content 2.67 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.896 α = 90 b = 133.896 β = 90 c = 75.984 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2015-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8726 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 40 99.7 0.072 0.077 0.027 0.99 16.6 8.2 256155 61.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.44 97.1 1.44 1.54 0.543 0.57
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.3 40 29683 1539 99.85 0.19942 0.19795 0.22758 0.2097 RANDOM 62.958
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 -0.73 1.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.716 r_dihedral_angle_4_deg 15.816 r_dihedral_angle_3_deg 14.429 r_long_range_B_refined 7.83 r_long_range_B_other 7.806 r_dihedral_angle_1_deg 5.629 r_scangle_other 5.336 r_mcangle_it 4.525 r_mcangle_other 4.524 r_scbond_it 3.174
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.716 r_dihedral_angle_4_deg 15.816 r_dihedral_angle_3_deg 14.429 r_long_range_B_refined 7.83 r_long_range_B_other 7.806 r_dihedral_angle_1_deg 5.629 r_scangle_other 5.336 r_mcangle_it 4.525 r_mcangle_other 4.524 r_scbond_it 3.174 r_scbond_other 3.171 r_mcbond_it 2.699 r_mcbond_other 2.699 r_angle_refined_deg 1.187 r_angle_other_deg 0.88 r_chiral_restr 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3738 Nucleic Acid Atoms Solvent Atoms 71 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing