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Crystal structure of complex of BBKI and Bovine Trypsin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6DWF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1.6M Ammonium Sulfate
0.1M Sodium Citrate
Crystal Properties Matthews coefficient Solvent content 2.69 54.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 207.809 α = 90 b = 207.809 β = 90 c = 107.167 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2017-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 96.5 0.099 0.108 0.041 14.4 5.6 169571
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 71.6 1.105 1.43 0.893 0.69 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 6DWF 2 49.91 140125 1397 80.4 0.19024 0.18991 0.1959 0.22282 0.2302 RANDOM 31.436
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.22 -5.22 10.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.272 r_dihedral_angle_4_deg 14.929 r_dihedral_angle_3_deg 14.104 r_dihedral_angle_1_deg 6.914 r_long_range_B_refined 5.361 r_long_range_B_other 5.361 r_mcangle_it 1.727 r_mcangle_other 1.727 r_angle_refined_deg 1.382 r_angle_other_deg 1.129
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.272 r_dihedral_angle_4_deg 14.929 r_dihedral_angle_3_deg 14.104 r_dihedral_angle_1_deg 6.914 r_long_range_B_refined 5.361 r_long_range_B_other 5.361 r_mcangle_it 1.727 r_mcangle_other 1.727 r_angle_refined_deg 1.382 r_angle_other_deg 1.129 r_scangle_other 1.07 r_mcbond_it 0.923 r_mcbond_other 0.923 r_scbond_it 0.555 r_scbond_other 0.555 r_chiral_restr 0.078 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17334 Nucleic Acid Atoms Solvent Atoms 810 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing