6DNY
Solution structure of the cyclic tetrapeptide, PYPV
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1 mM NA cyclo(-L-Pro-L-Tyr-L-Pro-L-Val-) | deuterated DMSO | 0 | 7.0 | 1 bar | 293 | Bruker AVANCE III 600 |
2 | 2D 1H-1H NOESY | 1 mM NA cyclo(-L-Pro-L-Tyr-L-Pro-L-Val-) | deuterated DMSO | 0 | 7.0 | 1 bar | 293 | Bruker AVANCE III 600 |
3 | 2D 1H-1H ROESY | 1 mM NA cyclo(-L-Pro-L-Tyr-L-Pro-L-Val-) | deuterated DMSO | 0 | 7.0 | 1 bar | 293 | Bruker AVANCE III 600 |
5 | 2D 1H-13C HSQC | 1 mM NA cyclo(-L-Pro-L-Tyr-L-Pro-L-Val-) | deuterated DMSO | 0 | 7.0 | 1 bar | 293 | Bruker AVANCE III 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CYANA | 3.96 | Guntert P. |
2 | structure calculation | CYANA | 3.96 | Guntert, Mumenthaler and Wuthrich |
3 | chemical shift assignment | CARA | Keller, Wuthrich | |
4 | peak picking | CARA | Keller and Wuthrich |