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Human Stimulator of Interferon Genes
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6CY7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.7 285 Sodium sulfate, PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.7 54.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.414 α = 90 b = 110.414 β = 90 c = 35.863 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M Rh coated collimating mirrors, K-B focusing mirrors 2018-05-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.97946 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 39.04 99.4 0.073 11.1 5.4 16624 33.96
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 99.2 0.718 2.1 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6CY7 1.95 20.07 15683 876 98.8 0.195 0.193 0.2034 0.241 0.2502 RANDOM 40.83
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.08 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.252 r_dihedral_angle_4_deg 22.211 r_dihedral_angle_3_deg 17.662 r_long_range_B_refined 8.466 r_long_range_B_other 8.404 r_dihedral_angle_1_deg 7.604 r_scangle_other 5.747 r_mcangle_it 4.27 r_mcangle_other 4.268 r_scbond_it 3.571
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.252 r_dihedral_angle_4_deg 22.211 r_dihedral_angle_3_deg 17.662 r_long_range_B_refined 8.466 r_long_range_B_other 8.404 r_dihedral_angle_1_deg 7.604 r_scangle_other 5.747 r_mcangle_it 4.27 r_mcangle_other 4.268 r_scbond_it 3.571 r_scbond_other 3.569 r_mcbond_other 2.781 r_mcbond_it 2.78 r_angle_refined_deg 1.771 r_angle_other_deg 1.05 r_chiral_restr 0.115 r_bond_refined_d 0.012 r_bond_other_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1396 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing