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The crystal structure of hemagglutinin from A/Hong Kong/125/2017 influenza virus in complex with LSTb
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4LN6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 293 0.2M Magnesium Acetate, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.28 62.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 203.571 α = 90 b = 117.866 β = 124.21 c = 119.86 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2017-08-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.0 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.55 50 99.7 10.5 3.7 26155
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.55 3.68
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4LN6 3.55 50.01 24868 1297 91.89 0.2231 0.22116 0.26033 0.2303 RANDOM 69.546
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.3 -1.54 4.94 -2.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.163 r_dihedral_angle_3_deg 21.227 r_dihedral_angle_4_deg 19.304 r_dihedral_angle_1_deg 9.181 r_long_range_B_refined 7.768 r_long_range_B_other 7.768 r_mcangle_it 4.6 r_mcangle_other 4.6 r_scangle_other 3.944 r_mcbond_it 2.674
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.163 r_dihedral_angle_3_deg 21.227 r_dihedral_angle_4_deg 19.304 r_dihedral_angle_1_deg 9.181 r_long_range_B_refined 7.768 r_long_range_B_other 7.768 r_mcangle_it 4.6 r_mcangle_other 4.6 r_scangle_other 3.944 r_mcbond_it 2.674 r_mcbond_other 2.673 r_scbond_it 2.211 r_scbond_other 2.211 r_angle_refined_deg 2.016 r_angle_other_deg 1.155 r_chiral_restr 0.101 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11415 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 255
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing