6CLZ | pdb_00006clz

MT1-MMP HPX domain with Blade 4 Loop Bound to Nanodiscs

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	HMQC	20 mM Tris-HCl, 300 mM NaCl, 0.02 % sodium azide, 93 % H2O, 7 % [U-100% 2H] D2O, 90 uM 2H, 13C, 15N MT1-MMP hemopexin-like domain, 180 uM MSP1D1, 14.4 mM PX4	93% H2O/7% D2O	300 mM	7.2	1 atm	303	Bruker AVANCE III 800
2	TROSY	20 mM Tris-HCl, 300 mM NaCl, 0.02 % sodium azide, 93 % H2O, 7 % [U-100% 2H] D2O, 90 uM 2H, 13C, 15N MT1-MMP hemopexin-like domain, 180 uM MSP1D1, 14.4 mM PX4	93% H2O/7% D2O	300 mM	7.2	1 atm	303	Bruker AVANCE III 800
3	CPMG-HMQC	20 mM Tris-HCl, 300 mM NaCl, 0.02 % sodium azide, 93 % H2O, 7 % [U-100% 2H] D2O, 90 uM 2H, 13C, 15N MT1-MMP hemopexin-like domain, 180 uM MSP1D1, 14.4 mM PX4	93% H2O/7% D2O	300 mM	7.2	1 atm	303	Bruker AVANCE III 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	800

NMR Refinement
Method	Details	Software
molecular dynamics	restrained molecular dynamics	NAMD

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	500
Conformers Submitted Total Number	15
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	TopSpin	3.2	Bruker
2	data analysis	Analysis	2.4	CCPN
3	structure calculation	HADDOCK	HADDOCK2.1	Bonvin
4	structure calculation	NAMD	NAMD2.1 with CUDA GPU processing	Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign
5	refinement	NAMD	NAMD2.1 with CUDA GPU processing	Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign