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chimera of mouse cadherin-11 EC1 and mouse cadherin-6 EC2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A4C PDB entries 2A4C & 6CGU experimental model PDB 6CGU PDB entries 2A4C & 6CGU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 295.15 4 M sodium chloride, 0.1 M sodium acetate, pH 5.5, cryoprotectant: 30% v/v glycerol
Crystal Properties Matthews coefficient Solvent content 3.95 68.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.496 α = 90 b = 81.03 β = 90 c = 166.192 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2014-08-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.9792 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.994 30 99.9 0.124 14.8 7.7 7540
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.994 3.18 1.766
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB entries 2A4C & 6CGU 2.994 19.681 1.34 7540 379 99.41 0.2718 0.2703 0.277 0.3005 0.3196
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.141 f_angle_d 0.589 f_chiral_restr 0.048 f_plane_restr 0.006 f_bond_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1573 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 19
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling PHASER phasing