6CFA
peptide PaAMP1R3
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 2 mM PaAMP1R3, 200 mM [U-98% 13C] DPC-d38, 10 % [U-99% 2H] D2O, 90 % H2O, 5 % 97% DSS | 90% H2O/10% D2O | sodium phosphate buffer mM | 7 | 1 atm | 298 | Bruker AVANCE 500 |
2 | 2D 1H-1H NOESY | 2 mM PaAMP1R3, 200 mM [U-98% 13C] DPC-d38, 10 % [U-99% 2H] D2O, 90 % H2O, 5 % 97% DSS | 90% H2O/10% D2O | sodium phosphate buffer mM | 7 | 1 atm | 298 | Bruker AVANCE 500 |
3 | 2D 1H-13C HSQC | 2 mM PaAMP1R3, 200 mM [U-98% 13C] DPC-d38, 10 % [U-99% 2H] D2O, 90 % H2O, 5 % 97% DSS | 90% H2O/10% D2O | sodium phosphate buffer mM | 7 | 1 atm | 298 | Bruker AVANCE 500 |
4 | 2D 1H-15N HMQC | 2 mM PaAMP1R3, 200 mM [U-98% 13C] DPC-d38, 10 % [U-99% 2H] D2O, 90 % H2O, 5 % 97% DSS | 90% H2O/10% D2O | sodium phosphate buffer mM | 7 | 1 atm | 298 | Bruker AVANCE 500 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | refinement in water | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
3 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
4 | peak picking | NMRView | Johnson, One Moon Scientific | |
5 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
6 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax |