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Selenomethionyl derivative of a GID4 fragment
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 10% 2-propanol, 20% PEG4K and 0.1M Na-HEPES
Crystal Properties Matthews coefficient Solvent content 1.97 37.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.167 α = 90 b = 39.986 β = 90 c = 129.007 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2017-04-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 43 99.9 0.049 0.05 0.014 1 41.7 13.4 315373 23452
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 98.7 0.256 0.267 0.073 0.983 12.8 1111
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 38 22235 1155 99.95 0.1601 0.1587 0.1696 0.1869 0.1942 9.917
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.46 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.051 r_dihedral_angle_4_deg 10.352 r_dihedral_angle_3_deg 9.986 r_dihedral_angle_1_deg 6.937 r_angle_refined_deg 1.624 r_mcangle_it 1.318 r_angle_other_deg 0.948 r_mcbond_it 0.849 r_mcbond_other 0.849 r_chiral_restr 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.051 r_dihedral_angle_4_deg 10.352 r_dihedral_angle_3_deg 9.986 r_dihedral_angle_1_deg 6.937 r_angle_refined_deg 1.624 r_mcangle_it 1.318 r_angle_other_deg 0.948 r_mcbond_it 0.849 r_mcbond_other 0.849 r_chiral_restr 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1517 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing SHELXD phasing PARROT phasing ARP/wARP model building Coot model building