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Capsid protein in the Staphylococcus aureus phage 80alpha-derived SaPI1 mature capsid
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.395 r_long_range_B_refined 5.524 r_dihedral_angle_2_deg 4.434 r_dihedral_angle_1_deg 1.714 r_angle_refined_deg 1.064 r_mcangle_it 0.829 r_mcbond_it 0.435 r_scbond_it 0.089 r_chiral_restr 0.052 r_bond_refined_d 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.395 r_long_range_B_refined 5.524 r_dihedral_angle_2_deg 4.434 r_dihedral_angle_1_deg 1.714 r_angle_refined_deg 1.064 r_mcangle_it 0.829 r_mcbond_it 0.435 r_scbond_it 0.089 r_chiral_restr 0.052 r_bond_refined_d 0.006 r_gen_planes_refined 0.001 r_bond_other_d r_angle_other_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Staphylococcus phage 80alpha
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 6471 Reported Resolution (Å) 8.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type KODAK SO-163 FILM Electron Dose (electrons/Å**2) 25
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TECNAI F20 Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 62000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION EMAN 1.9 CTF CORRECTION EMAN 1.9 MODEL FITTING UCSF Chimera 1.10.2 MODEL REFINEMENT REFMAC 5.8.0158 MODEL REFINEMENT Coot 0.8.8 MODEL REFINEMENT Coot 0.8.6.1 INITIAL EULER ASSIGNMENT Auto3DEM 4.01 FINAL EULER ASSIGNMENT Auto3DEM 4.01 CLASSIFICATION Auto3DEM 4.01 RECONSTRUCTION Auto3DEM 4.01
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING ONLY 6471