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Crystal structure of halogenase PltM in complex with ethyl mercury and mercury
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 295 0.1 M Tris pH 8, 0.2 M NaCl, 0.1 M CaCl2 and 12-17% PEG 8000, crystals soaked in the same solution with 1 mM ethylmercury phosphate
Crystal Properties Matthews coefficient Solvent content 2.31 46.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.722 α = 90 b = 156.338 β = 90 c = 216.134 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2014-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 96.3 0.16 11.2 6.7 82751 2.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.44 92.2 0.71 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 45 78214 4092 96.32 0.21165 0.20933 0.2131 0.25603 0.2572 RANDOM 27.704
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 0.04 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.324 r_dihedral_angle_3_deg 15.3 r_dihedral_angle_4_deg 14.431 r_dihedral_angle_1_deg 6.069 r_long_range_B_refined 3.441 r_long_range_B_other 3.441 r_mcangle_it 1.754 r_mcangle_other 1.753 r_scangle_other 1.747 r_scbond_it 1.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.324 r_dihedral_angle_3_deg 15.3 r_dihedral_angle_4_deg 14.431 r_dihedral_angle_1_deg 6.069 r_long_range_B_refined 3.441 r_long_range_B_other 3.441 r_mcangle_it 1.754 r_mcangle_other 1.753 r_scangle_other 1.747 r_scbond_it 1.316 r_scbond_other 1.316 r_angle_refined_deg 1.186 r_mcbond_it 0.985 r_mcbond_other 0.985 r_angle_other_deg 0.905 r_chiral_restr 0.067 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15565 Nucleic Acid Atoms Solvent Atoms 451 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELXD phasing