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The structure of AtzH: a little known member of the atrazine breakdown pathway
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 Protein was at 4 mg/mL and set up in equal volume with the reservoir (150 nL plus 150 nL) with the reservoir conditions being: 20% (w/v) PEG 6000, 2.5% tert-butanol (v/v) and 100 mM sodium citrate buffer at pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.2 44.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.809 α = 99.81 b = 51.831 β = 102.15 c = 59.679 γ = 92.48
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-08-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.95374 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 50.4 97.2 0.077 0.077 0.995 7.8 3.6 71033
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.67 95.3 0.581 0.581 0.733 1.9 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.64 50.4 67428 3265 96.73 0.20033 0.19901 0.2094 0.22812 0.2372 RANDOM 21.627
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.93 -0.85 -0.24 -0.12 1.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.58 r_dihedral_angle_4_deg 15.423 r_dihedral_angle_3_deg 13.351 r_long_range_B_refined 7.101 r_long_range_B_other 6.998 r_dihedral_angle_1_deg 5.86 r_scangle_other 4.523 r_mcangle_it 3.685 r_mcangle_other 3.684 r_scbond_it 3.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.58 r_dihedral_angle_4_deg 15.423 r_dihedral_angle_3_deg 13.351 r_long_range_B_refined 7.101 r_long_range_B_other 6.998 r_dihedral_angle_1_deg 5.86 r_scangle_other 4.523 r_mcangle_it 3.685 r_mcangle_other 3.684 r_scbond_it 3.003 r_scbond_other 3.003 r_mcbond_it 2.377 r_mcbond_other 2.377 r_angle_refined_deg 1.856 r_angle_other_deg 1.042 r_chiral_restr 0.122 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3902 Nucleic Acid Atoms Solvent Atoms 509 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing