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Crystal Structure of 4-Oxalocrotonate Tautomerase After Incubation with 5-Fluoro-2-hydroxy-2,4-pentadienoate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 100 mM MES, pH 6.5, with 20% PEG 4600 (w/v), and 0.1 M sodium nitrate
Crystal Properties Matthews coefficient Solvent content 2.2 44.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.413 α = 90 b = 88.011 β = 98.26 c = 112.674 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 300 mm plate 2013-08-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.03 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.51 50 99.6 32.2 3.7 131636
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.51 43.29 124537 6595 99.41 0.1183 0.1156 0.1148 0.1694 0.1694 RANDOM 22.54
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.85 0.78 -0.64 -0.31
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 41.13 r_dihedral_angle_2_deg 34.912 r_sphericity_bonded 23.407 r_dihedral_angle_4_deg 20.664 r_dihedral_angle_3_deg 12.547 r_mcangle_it 7.795 r_rigid_bond_restr 6.441 r_mcbond_it 6.251 r_mcbond_other 6.178 r_dihedral_angle_1_deg 5.644
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 41.13 r_dihedral_angle_2_deg 34.912 r_sphericity_bonded 23.407 r_dihedral_angle_4_deg 20.664 r_dihedral_angle_3_deg 12.547 r_mcangle_it 7.795 r_rigid_bond_restr 6.441 r_mcbond_it 6.251 r_mcbond_other 6.178 r_dihedral_angle_1_deg 5.644 r_angle_refined_deg 1.269 r_angle_other_deg 0.709 r_chiral_restr 0.075 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6735 Nucleic Acid Atoms Solvent Atoms 641 Heterogen Atoms 255
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling PHASER phasing