6BA6
Solution structure of Rap1b/talin complex
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N/13C-edited NOESY | 0.6 mM [U-13C; U-15N] Rap1b, 0.9 mM talin-F0 | 95% H2O/5% D2O | 50mM NaCl, 5mM MgCl2 mM | 6.6 | 101325 Pa | 301 | Bruker AVANCE 900 |
3 | 3D_15N/13C-edited NOESY | 0.5 mM [U-13C; U-15N] talin-F0, 0.7 mM Rap1b | 95% H20, 5% D2O | 50mM NaCl, 5mM MgCl2 mM | 6.6 | 101325 Pa | 301 | Bruker AVANCE 900 |
4 | 3D_15N-edited NOESY | 0.5 mM [U-15N; U-2H] talin-F0, 0.7 mM Rap1b | 95% H20, 5% D2O | 50mM NaCl, 5mM MgCl2 mM | 6.6 | 101325 Pa | 301 | Bruker AVANCE 900 |
5 | 3D_15N/13C-filtered NOESY | 0.5 mM [U-13C; U-15N] talin-F0, 0.7 mM Rap1b | 0.2% H20, 99.8% D20 | 50mM NaCl, 5mM MgCl2 mM | 6.6 | 101325 Pa | 301 | Bruker AVANCE 900 |
6 | Standard triple-resonance experiments | 0.6 mM [U-13C; U-15N] Rap1b | 95% H2O/5% D2O | 50mM NaCl, 5mM MgCl2 mM | 6.6 | 101325 Pa | 301 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
2 | Bruker | AVANCE III | 850 |
3 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | 20 structures for lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
2 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
3 | chemical shift assignment | PASA | Xu, Wang, Yang, Vaynberg, Qin | |
4 | peak picking | PIPP | Garrett |