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NMR solution structure of Defensin1 from Centruroides limpidus limpidus
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D DQF-COSY 0.25 mM Def1 95% H2O/5% D2O 1 6.5 1 atm 298 Varian INOVA 500 2 2D 1H-1H NOESY 0.25 mM Def1 95% H2O/5% D2O 1 6.5 1 atm 298 Varian INOVA 500 3 2D 1H-1H NOESY 0.25 mM Def1 95% H2O/5% D2O 1 6.5 1 atm 298 Varian INOVA 500 4 2D 1H-1H TOCSY 0.25 mM Def1 95% H2O/5% D2O 1 6.5 1 atm 298 Varian INOVA 500 5 2D 1H-1H TOCSY 0.25 mM Def1 95% H2O/5% D2O 1 6.5 1 atm 298 Bruker AMX 700 6 2D 1H-1H NOESY 0.25 mM Def1 95% H2O/5% D2O 1 6.5 1 atm 298 Bruker AMX 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 500 2 Bruker AMX 700
NMR Refinement Method Details Software molecular dynamics 350 Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 500 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 data analysis CARA 1.5 Keller and Wuthrich 3 chemical shift assignment CARA 1.5 Keller and Wuthrich 4 chemical shift assignment CYANA Guntert, Mumenthaler and Wuthrich 5 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 6 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman