☰ Navigation Tabs
Mycobacterium tuberculosis RmlA in complex with Mg/dTTP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H5S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 18 - 22% poly(ethylene glycol) 8000 and 100 mM MOPS
Crystal Properties Matthews coefficient Solvent content 2.97 58.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.403 α = 90 b = 96.403 β = 90 c = 151.924 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2017-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9794 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 98.5 0.049 55.7 5.9 89386
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 97 0.198 5.9 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1H5S 1.6 50 84972 4414 98.41 0.19617 0.1946 0.2026 0.22694 0.2323 RANDOM 31.691
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.47 0.47 -0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.43 r_dihedral_angle_4_deg 16.49 r_dihedral_angle_3_deg 15.082 r_dihedral_angle_1_deg 7.285 r_long_range_B_refined 6.581 r_long_range_B_other 6.581 r_scangle_other 5.423 r_mcangle_it 4.433 r_mcangle_other 4.432 r_scbond_it 3.816
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.43 r_dihedral_angle_4_deg 16.49 r_dihedral_angle_3_deg 15.082 r_dihedral_angle_1_deg 7.285 r_long_range_B_refined 6.581 r_long_range_B_other 6.581 r_scangle_other 5.423 r_mcangle_it 4.433 r_mcangle_other 4.432 r_scbond_it 3.816 r_scbond_other 3.815 r_mcbond_other 3.42 r_mcbond_it 3.419 r_angle_refined_deg 1.676 r_angle_other_deg 0.834 r_chiral_restr 0.208 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4198 Nucleic Acid Atoms Solvent Atoms 349 Heterogen Atoms 116
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHASER phasing