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Artificial metalloproteins containing a Co4O4 active site - 2xm-Sav
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QCB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 2.6 M ammonium sulfate, 0.1 M sodium acetate, pH 4.0
Crystal Properties Matthews coefficient Solvent content 2.31 46.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.58 α = 90 b = 57.58 β = 90 c = 183.79 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2017-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 54.95 99.9 0.995 13.2 8.3 27278
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 1.49
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2QCB 1.46 54.95 25836 1383 99.7 0.179 0.17786 0.1849 0.20061 0.2087 RANDOM 16.799
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.12 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.098 r_dihedral_angle_3_deg 12.167 r_dihedral_angle_4_deg 11.041 r_dihedral_angle_1_deg 7.311 r_long_range_B_refined 6.016 r_angle_refined_deg 5.915 r_long_range_B_other 5.791 r_scangle_other 4.448 r_scbond_it 4.238 r_scbond_other 3.137
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.098 r_dihedral_angle_3_deg 12.167 r_dihedral_angle_4_deg 11.041 r_dihedral_angle_1_deg 7.311 r_long_range_B_refined 6.016 r_angle_refined_deg 5.915 r_long_range_B_other 5.791 r_scangle_other 4.448 r_scbond_it 4.238 r_scbond_other 3.137 r_mcangle_it 2.987 r_mcangle_other 2.986 r_angle_other_deg 2.393 r_mcbond_it 2.101 r_mcbond_other 2.071 r_chiral_restr 0.286 r_bond_refined_d 0.044 r_gen_planes_refined 0.014 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 911 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing