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Cab2 mutant-H337A complex with phosphopantothenoylcystine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P9O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 287 200mM ammonium tartrate, 20% PEG 3350 2mM MnCl2
Crystal Properties Matthews coefficient Solvent content 1.84 33.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.097 α = 90 b = 112.468 β = 91.12 c = 54.573 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2018-01-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97853 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 56.23 96.2 0.11 0.0471 16.7 6.5 40420
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 0.604 0.27 0.873
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1P9O 1.99 56.23 38505 1901 95.51 0.1826 0.1808 0.1873 0.2176 0.2239 RANDOM 32.939
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.17 -0.04 -3.13 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.012 r_dihedral_angle_4_deg 18.827 r_dihedral_angle_3_deg 13.641 r_dihedral_angle_1_deg 5.863 r_angle_other_deg 3.567 r_angle_refined_deg 1.415 r_chiral_restr 0.086 r_bond_refined_d 0.009 r_gen_planes_other 0.006 r_gen_planes_refined 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.012 r_dihedral_angle_4_deg 18.827 r_dihedral_angle_3_deg 13.641 r_dihedral_angle_1_deg 5.863 r_angle_other_deg 3.567 r_angle_refined_deg 1.415 r_chiral_restr 0.086 r_bond_refined_d 0.009 r_gen_planes_other 0.006 r_gen_planes_refined 0.005 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5058 Nucleic Acid Atoms Solvent Atoms 524 Heterogen Atoms 64
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing