☰ Navigation Tabs
Crystal structure of Maltose O-acetyltransferase from E. coli
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IC7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 20% Poly Ethylene glycol 3350, 0.1M Tris (pH 8.0), 0.2M NaCl
Crystal Properties Matthews coefficient Solvent content 2.26 45.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.104 α = 90 b = 62.104 β = 90 c = 81.128 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2018-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.34 50 99.5 0.029 34.66 5.6 78711
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.34 1.36 0.187
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2IC7 1.34 26.91 74382 3885 99.41 0.17239 0.17145 0.1902 0.1957 RANDOM 14.828
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 -0.12 -0.24 0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.452 r_dihedral_angle_4_deg 17.281 r_dihedral_angle_3_deg 12.842 r_dihedral_angle_1_deg 6.774 r_long_range_B_refined 4.88 r_long_range_B_other 4.839 r_scangle_other 3.991 r_scbond_it 2.622 r_scbond_other 2.622 r_mcangle_other 1.797
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.452 r_dihedral_angle_4_deg 17.281 r_dihedral_angle_3_deg 12.842 r_dihedral_angle_1_deg 6.774 r_long_range_B_refined 4.88 r_long_range_B_other 4.839 r_scangle_other 3.991 r_scbond_it 2.622 r_scbond_other 2.622 r_mcangle_other 1.797 r_mcangle_it 1.795 r_angle_refined_deg 1.778 r_mcbond_it 1.277 r_mcbond_other 1.271 r_angle_other_deg 1.049 r_chiral_restr 0.313 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2808 Nucleic Acid Atoms Solvent Atoms 297 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling MOLREP phasing