☰ Navigation Tabs
Structure of Ctr9, Paf1 and Cdc73 ternary complex from Myceliophthora thermophila
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2M potassium phosphate dibasic, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.94 58.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.867 α = 90 b = 237.789 β = 90 c = 62.737 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 PIXEL DECTRIS PILATUS3 6M 2018-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.9789 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.88 118.89 100 0.075 24.7 10.4 34480
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 2.95 100 1.23 1.4 10.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.88 118.89 32640 1729 99.26 0.24829 0.24522 0.2439 0.30929 0.3032 RANDOM 93.026
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.82 -0.2 -1.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.309 r_dihedral_angle_3_deg 20.548 r_dihedral_angle_4_deg 19.534 r_long_range_B_refined 14.21 r_long_range_B_other 14.21 r_scangle_other 10.006 r_mcangle_it 9.101 r_mcangle_other 9.1 r_dihedral_angle_1_deg 6.808 r_scbond_it 6.461
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.309 r_dihedral_angle_3_deg 20.548 r_dihedral_angle_4_deg 19.534 r_long_range_B_refined 14.21 r_long_range_B_other 14.21 r_scangle_other 10.006 r_mcangle_it 9.101 r_mcangle_other 9.1 r_dihedral_angle_1_deg 6.808 r_scbond_it 6.461 r_scbond_other 6.461 r_mcbond_it 6.059 r_mcbond_other 6.051 r_angle_refined_deg 1.362 r_angle_other_deg 0.837 r_chiral_restr 0.071 r_bond_refined_d 0.01 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8372 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing