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Structure insight into histone chaperone Chz1-mediated H2A.Z recognition and replacement
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5CHL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 Bicine,1,4-Dioxane,PEG 20000
Crystal Properties Matthews coefficient Solvent content 1.38 10.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.082 α = 72.37 b = 46.21 β = 70.92 c = 56.662 γ = 70.6
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315 2016-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.97930 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 96.5 0.048 20 3.9 42986
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 0.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5CHL 1.65 50 40827 2158 96.18 0.18321 0.18147 0.1852 0.216 0.2163 RANDOM 24.642
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 1.28 -0.17 1.36 -0.35 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.927 r_dihedral_angle_4_deg 17.467 r_dihedral_angle_3_deg 16.909 r_long_range_B_other 7.844 r_long_range_B_refined 7.832 r_dihedral_angle_1_deg 5.944 r_scangle_other 5.754 r_mcangle_it 3.852 r_mcangle_other 3.851 r_scbond_it 3.703
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.927 r_dihedral_angle_4_deg 17.467 r_dihedral_angle_3_deg 16.909 r_long_range_B_other 7.844 r_long_range_B_refined 7.832 r_dihedral_angle_1_deg 5.944 r_scangle_other 5.754 r_mcangle_it 3.852 r_mcangle_other 3.851 r_scbond_it 3.703 r_scbond_other 3.699 r_mcbond_it 2.482 r_mcbond_other 2.482 r_angle_refined_deg 1.968 r_angle_other_deg 0.947 r_chiral_restr 0.121 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3039 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing