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Crystal structure of the human glial fibrillary acidic protein 1B domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UF1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 295 100 mM Tris-HCl pH 8.0, 400 mM NaCl and 22% (w/v) PEG10,000
Crystal Properties Matthews coefficient Solvent content 2.78 55.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 23.588 α = 77.56 b = 106.158 β = 90.14 c = 113.225 γ = 83.8
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD ADSC QUANTUM 270 2016-06-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 1.0 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 94.9 0.062 18.2 1.9 29465
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 0.614
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3UF1 2.51 50 29465 1505 84.61 0.27071 0.2686 0.2718 0.31086 0.3112 RANDOM 57.085
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.22 -0.88 1.74 0.59 0.51 0.51
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 65.782 r_dihedral_angle_2_deg 26.305 r_dihedral_angle_3_deg 16.268 r_dihedral_angle_4_deg 14.458 r_rigid_bond_restr 9.928 r_scangle_other 9.266 r_scbond_it 7.297 r_mcbond_it 6.56 r_mcbond_other 6.558 r_dihedral_angle_1_deg 3.593
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 65.782 r_dihedral_angle_2_deg 26.305 r_dihedral_angle_3_deg 16.268 r_dihedral_angle_4_deg 14.458 r_rigid_bond_restr 9.928 r_scangle_other 9.266 r_scbond_it 7.297 r_mcbond_it 6.56 r_mcbond_other 6.558 r_dihedral_angle_1_deg 3.593 r_angle_other_deg 1.725 r_angle_refined_deg 1.229 r_chiral_restr 0.058 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6808 Nucleic Acid Atoms Solvent Atoms 132 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing