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Crystal structure of thermostable FiSufS-SufU complex from thermophilic Fervidobacterium Islandicum AW-1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6A6E 6A6E and 6A6F experimental model PDB 6A6F 6A6E and 6A6F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2M lithium nitrate, PEG 3350, 0.1M HEPES, pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.19 43.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.265 α = 90 b = 76.969 β = 90 c = 192.52 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2016-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.979133 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 98.95 0.129 7.46 8.6 39603
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54 0.435
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6A6E and 6A6F 2.49 29.616 37691 1912 98.85 0.14962 0.14633 0.1544 0.2139 0.2157 RANDOM 38.12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.284 r_dihedral_angle_3_deg 16.037 r_dihedral_angle_4_deg 15.53 r_long_range_B_refined 6.962 r_long_range_B_other 6.962 r_dihedral_angle_1_deg 6.395 r_scangle_other 5.051 r_mcangle_other 3.879 r_mcangle_it 3.878 r_scbond_it 3.151
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.284 r_dihedral_angle_3_deg 16.037 r_dihedral_angle_4_deg 15.53 r_long_range_B_refined 6.962 r_long_range_B_other 6.962 r_dihedral_angle_1_deg 6.395 r_scangle_other 5.051 r_mcangle_other 3.879 r_mcangle_it 3.878 r_scbond_it 3.151 r_scbond_other 3.151 r_mcbond_it 2.493 r_mcbond_other 2.488 r_angle_refined_deg 1.511 r_angle_other_deg 0.822 r_chiral_restr 0.083 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8832 Nucleic Acid Atoms Solvent Atoms 458 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing