X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5ZRC 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH2920.2 M Ammonium acetate, 0.1 M Sodium citrate tribasic dihydrate pH 5.6, 30% w/v PEG 4000
Crystal Properties
Matthews coefficientSolvent content
2.0538.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 31.61α = 90
b = 72.76β = 104.7
c = 57.86γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2015-02-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM140.953720ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4124.36960.06472.146731
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.411.49940.432

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5ZRC1.4124.3644340234995.680.142830.140620.18392RANDOM23.099
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.230.61-0.12-0.38
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free40.055
r_dihedral_angle_2_deg28.862
r_sphericity_bonded19.625
r_dihedral_angle_4_deg13.834
r_dihedral_angle_3_deg13.59
r_long_range_B_refined8.558
r_long_range_B_other8.557
r_scangle_other8.527
r_rigid_bond_restr7.331
r_scbond_it7.244
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free40.055
r_dihedral_angle_2_deg28.862
r_sphericity_bonded19.625
r_dihedral_angle_4_deg13.834
r_dihedral_angle_3_deg13.59
r_long_range_B_refined8.558
r_long_range_B_other8.557
r_scangle_other8.527
r_rigid_bond_restr7.331
r_scbond_it7.244
r_scbond_other7.243
r_dihedral_angle_1_deg7.151
r_mcangle_other4.551
r_mcangle_it4.54
r_mcbond_it3.91
r_mcbond_other3.722
r_angle_refined_deg1.404
r_angle_other_deg0.73
r_chiral_restr0.086
r_gen_planes_refined0.014
r_bond_refined_d0.009
r_gen_planes_other0.006
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1914
Nucleic Acid Atoms
Solvent Atoms311
Heterogen Atoms58

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing