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M. smegmatis antimutator protein MutT2 in complex with CMP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ZRC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 292 0.1 M Imidazole pH 6.5, 1.0 M Sodium acetate trihydrate
Crystal Properties Matthews coefficient Solvent content 1.95 35.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.64 α = 90 b = 59.55 β = 90 c = 31.29 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2014-09-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.541790
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.54 28.74 98.3 0.075 24.6 13.1 18346
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.54 1.63 91.9 0.586 4.6 12.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5ZRC 1.54 28.74 17376 938 98.64 0.16899 0.16704 0.1672 0.20469 0.2015 RANDOM 15.926
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.35 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.122 r_dihedral_angle_4_deg 14.491 r_dihedral_angle_3_deg 12.777 r_dihedral_angle_1_deg 7.938 r_long_range_B_refined 6.618 r_long_range_B_other 6.616 r_scangle_other 3.971 r_mcangle_other 3.08 r_mcangle_it 3.043 r_scbond_it 2.784
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.122 r_dihedral_angle_4_deg 14.491 r_dihedral_angle_3_deg 12.777 r_dihedral_angle_1_deg 7.938 r_long_range_B_refined 6.618 r_long_range_B_other 6.616 r_scangle_other 3.971 r_mcangle_other 3.08 r_mcangle_it 3.043 r_scbond_it 2.784 r_scbond_other 2.784 r_mcbond_it 1.989 r_mcbond_other 1.976 r_angle_refined_deg 1.294 r_angle_other_deg 0.603 r_chiral_restr 0.082 r_gen_planes_refined 0.008 r_bond_refined_d 0.006 r_gen_planes_other 0.002 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 940 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing