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Sulfur binding domain and SRA domain of ScoMcrA complexed with phosphorothioated DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 287 2.0M ammonium sulfate, 0.1M CAPS buffer, pH 10.5, 0.2M lithium sulfate
Crystal Properties Matthews coefficient Solvent content 6.43 80.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.34 α = 90 b = 122.34 β = 90 c = 313.691 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-09-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.97916 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.29 113.98 99.9 14.1 3.8 34877
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.29 113.98 17670 943 99.66 0.2526 0.2507 0.2529 0.2878 0.2908 RANDOM 116.972
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.78 3.78 -7.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.935 r_dihedral_angle_3_deg 22.935 r_dihedral_angle_4_deg 16.702 r_dihedral_angle_1_deg 7.32 r_angle_refined_deg 1.792 r_angle_other_deg 1.216 r_chiral_restr 0.112 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.935 r_dihedral_angle_3_deg 22.935 r_dihedral_angle_4_deg 16.702 r_dihedral_angle_1_deg 7.32 r_angle_refined_deg 1.792 r_angle_other_deg 1.216 r_chiral_restr 0.112 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.007 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2523 Nucleic Acid Atoms 404 Solvent Atoms 3 Heterogen Atoms 20
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction