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Crystal structure of DFA-IIIase from Arthrobacter chlorophenolicus A6 in complex with GF2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 287 10% PEG 3350,0.1 M Sodium malonate (pH 4.2)
Crystal Properties Matthews coefficient Solvent content 2.25 45.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.121 α = 90 b = 79.233 β = 100.38 c = 140.571 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2014-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 50 99.2 20.8 5.4 209495
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.86 1.89
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.86 50 198888 10583 99.08 0.16773 0.16631 0.1764 0.1942 0.2019 RANDOM 27.728
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4 -0.86 0.8 -0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.167 r_dihedral_angle_4_deg 17.221 r_dihedral_angle_3_deg 12.433 r_dihedral_angle_1_deg 7.161 r_long_range_B_refined 4.225 r_long_range_B_other 4.131 r_scangle_other 2.387 r_mcangle_it 2.185 r_mcangle_other 2.184 r_scbond_it 1.443
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.167 r_dihedral_angle_4_deg 17.221 r_dihedral_angle_3_deg 12.433 r_dihedral_angle_1_deg 7.161 r_long_range_B_refined 4.225 r_long_range_B_other 4.131 r_scangle_other 2.387 r_mcangle_it 2.185 r_mcangle_other 2.184 r_scbond_it 1.443 r_scbond_other 1.443 r_angle_refined_deg 1.366 r_mcbond_it 1.332 r_mcbond_other 1.332 r_angle_other_deg 0.932 r_chiral_restr 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19120 Nucleic Acid Atoms Solvent Atoms 1335 Heterogen Atoms 136
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing