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MAP2K7 C276S mutant-inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5Y90
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 PEG 3350, sodium citrate
Crystal Properties Matthews coefficient Solvent content 2.08 40.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.584 α = 90 b = 63.827 β = 90 c = 88.458 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 PIXEL DECTRIS PILATUS 300K 2017-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.98 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 51.8 98.8 10.2 6.4 14635
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.36
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5Y90 2.28 51.76 13893 704 99.75 0.19544 0.19227 0.2015 0.25806 0.2645 RANDOM 46.462
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.83 1.5 -3.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.626 r_dihedral_angle_4_deg 22.904 r_dihedral_angle_3_deg 18.976 r_long_range_B_refined 9.473 r_long_range_B_other 9.472 r_scangle_other 6.999 r_dihedral_angle_1_deg 6.466 r_mcangle_it 4.839 r_mcangle_other 4.838 r_scbond_it 4.584
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.626 r_dihedral_angle_4_deg 22.904 r_dihedral_angle_3_deg 18.976 r_long_range_B_refined 9.473 r_long_range_B_other 9.472 r_scangle_other 6.999 r_dihedral_angle_1_deg 6.466 r_mcangle_it 4.839 r_mcangle_other 4.838 r_scbond_it 4.584 r_scbond_other 4.584 r_mcbond_it 3.384 r_mcbond_other 3.381 r_angle_refined_deg 1.731 r_angle_other_deg 0.913 r_chiral_restr 0.104 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_gen_planes_other 0.008 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2196 Nucleic Acid Atoms Solvent Atoms 101 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing